Software: Difference between revisions

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Software developed by P. Güntert and collaborators.
Software developed by P. Güntert and collaborators.


== Available softwares ==  
== Available software ==  
 
* [[ARTINA]]: Artificial intelligence for NMR applications


* [[ATNOS]]: Automated NOESY peak picking
* [[ATNOS]]: Automated NOESY peak picking
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* [[CANDID]]: Combined automated NOE assignment and structure determination module
* [[CANDID]]: Combined automated NOE assignment and structure determination module
* [[Chess2FLYA]]: Chemical shift statistics to FLYA


* [[COCO]]: Compare covalent geometry
* [[COCO]]: Compare covalent geometry
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* [http://www.cyana.org/wiki CYANA]: Combined assignment and dynamics algorithm for NMR applications
* [http://www.cyana.org/wiki CYANA]: Combined assignment and dynamics algorithm for NMR applications


* [http://www.bpc.uni-frankfurt.de/cyrange.html CYRANGE]: Determination of optimum residue ranges for the superposition of protein structures
* [[CYLIB]]: CYANA library entry preparation from mmCIF or Mol2 files
 
* [https://uni-frankfurt.guentert.science/cyrange CYRANGE]: Determination of optimum residue ranges for the superposition of protein structures


* [[GARANT]]: General algorithm for resonance assignment
* [[GARANT]]: General algorithm for resonance assignment


* [[INFIT]]: Coupling constants from inverse Fourier transformation of in-phase multiplets
* [[INFIT]]: Coupling constants from inverse Fourier transformation of in-phase multiplets
* [[KUJIRA]]: Interactive and semi-automatic NMR spectra analysis
* [https://nmrtist.org/ NMRtist]: Online platform for automated biomolecular NMR spectra analysis


* [[MAPPER]]: Sequence-specific NMR assignment of proteins by global sequence mapping
* [[MAPPER]]: Sequence-specific NMR assignment of proteins by global sequence mapping
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* [[UPLABEL]]: Unique pair labeling
* [[UPLABEL]]: Unique pair labeling


* [[XEASY]]: X-windows version of ETH automated Spectroscopy
== Other software ==
 
== Other softwares ==


Not yet available, not separately available or outdated softwares.
Not separately available, not yet available, or outdated software.


* [[ASNO]]: Semi-automated assignment of NOEs
* [[ASNO]]: Semi-automated assignment of NOEs
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* [[OPALp]]: Energy refinement and MD simulation algorithm
* [[OPALp]]: Energy refinement and MD simulation algorithm
* [[XEASY]]: X-windows version of ETH automated Spectroscopy

Latest revision as of 11:32, 25 January 2026

Software developed by P. Güntert and collaborators.

Available software

  • ARTINA: Artificial intelligence for NMR applications
  • ATNOS: Automated NOESY peak picking
  • AUTOPSY: Automated peak picking in NMR spectroscopy
  • CANDID: Combined automated NOE assignment and structure determination module
  • COCO: Compare covalent geometry
  • COFIMA: Coordinate and constraint file manipulation
  • CYANA: Combined assignment and dynamics algorithm for NMR applications
  • CYLIB: CYANA library entry preparation from mmCIF or Mol2 files
  • CYRANGE: Determination of optimum residue ranges for the superposition of protein structures
  • GARANT: General algorithm for resonance assignment
  • INFIT: Coupling constants from inverse Fourier transformation of in-phase multiplets
  • KUJIRA: Interactive and semi-automatic NMR spectra analysis
  • NMRtist: Online platform for automated biomolecular NMR spectra analysis
  • MAPPER: Sequence-specific NMR assignment of proteins by global sequence mapping
  • POMA: Product operator formalism in Mathematica
  • PROSA: Processing algorithms

Other software

Not separately available, not yet available, or outdated software.

  • ASNO: Semi-automated assignment of NOEs
  • CALIBA: Calibration of NOE distance constraints
  • DIANA: Distance geometry algorithm for NMR applications
  • DYANA: Dynamics algorithm for NMR applications
  • EASY: ETH automated spectroscopy
  • FLATT: Baseline correction for multidimensional NMR spectra
  • FLYA: Fully automated structure determination of proteins in solution
  • FOUND: Grid search and stereospecific assignment algorithm
  • GLOMSA: Global method for stereo-specific assignments
  • HABAS: Grid search and stereospecific assignment algorithm
  • IFLAT: Baseline correction for multidimensional NMR spectra
  • INCLAN: Interactive command language
  • OPAL: Energy refinement and MD simulation algorithm for vector supercomputers
  • OPALp: Energy refinement and MD simulation algorithm
  • XEASY: X-windows version of ETH automated Spectroscopy