GARANT: Difference between revisions
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'' General algorithm for resonance assignment | ''General algorithm for resonance assignment'' | ||
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== Availability == | == Availability == | ||
* GARANT is [[GARANT 2.0 Software License|available]] free-of-charge to all users who agree with the [[GARANT 2.0 Software License|copyright and legal information]]. | |||
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*GARANT is [http://www.mol.biol.ethz.ch/groups/wuthrich_group/software/garant available] free-of-charge from the group of Prof. K. Wüthrich at ETH Zürich. | *GARANT is [http://www.mol.biol.ethz.ch/groups/wuthrich_group/software/garant available] free-of-charge from the group of Prof. K. Wüthrich at ETH Zürich. | ||
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== References == | == References == | ||
* Bartels, C., Güntert, P., Billeter, M. & Wüthrich, K. GARANT-A general algorithm for resonance assignment of multidimensional nuclear magnetic resonance spectra. [http://dx.doi.org/10.1002/(SICI)1096-987X(19970115)18:1<139::AID-JCC13>3.0.CO;2-H J. Comp. Chem. 18, 139–149 (1997)] | * Bartels, C., Güntert, P., Billeter, M. & Wüthrich, K. GARANT-A general algorithm for resonance assignment of multidimensional nuclear magnetic resonance spectra. [http://dx.doi.org/10.1002/(SICI)1096-987X(19970115)18:1<139::AID-JCC13>3.0.CO;2-H J. Comp. Chem. 18, 139–149 (1997)] | ||
:Any reports or publications of results obtained with GARANT must cite this paper. | :''Any reports or publications of results obtained with GARANT must cite this paper.'' | ||
* Bartels, C., Billeter, M., Güntert, P. & Wüthrich, K. Automated sequence-specific NMR assignment of homologous proteins using the program GARANT. [http://dx.doi.org/10.1007/BF00202037 J. Biomol. NMR 7, 207–213 (1996)] | * Bartels, C., Billeter, M., Güntert, P. & Wüthrich, K. Automated sequence-specific NMR assignment of homologous proteins using the program GARANT. [http://dx.doi.org/10.1007/BF00202037 J. Biomol. NMR 7, 207–213 (1996)] | ||
Latest revision as of 14:10, 14 August 2009
General algorithm for resonance assignment
GARANT is an algorithm for automatic resonance assignment using as input the primary structure of a protein and lists with observed cross peaks from various spectra; knowledge about magnetization transfer pathways in the NMR experiments used is read from a library. The basic concept of GARANT is the matching of observed cross peaks to expected cross peaks derived from the sequence and the magnetization transfer pathways.
Availability
- GARANT is available free-of-charge to all users who agree with the copyright and legal information.
References
- Bartels, C., Güntert, P., Billeter, M. & Wüthrich, K. GARANT-A general algorithm for resonance assignment of multidimensional nuclear magnetic resonance spectra. J. Comp. Chem. 18, 139–149 (1997)
- Any reports or publications of results obtained with GARANT must cite this paper.
- Bartels, C., Billeter, M., Güntert, P. & Wüthrich, K. Automated sequence-specific NMR assignment of homologous proteins using the program GARANT. J. Biomol. NMR 7, 207–213 (1996)