COFIMA: Difference between revisions
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With COFIMA you can easily: | With COFIMA you can easily: | ||
*Convert between different data file formats | * Convert between different data file formats | ||
*Rename atoms, residues and dihedral angles | * Rename atoms, residues and dihedral angles | ||
*Delete atoms, distance or angle constraints | * Delete atoms, distance or angle constraints | ||
*List specific atoms, distance or angle constraints | * List specific atoms, distance or angle constraints | ||
*Measure distances and dihedral angles | * Measure distances and dihedral angles | ||
*Attach atoms (e.g. hydrogens) | * Attach atoms (e.g. hydrogens) | ||
*Insert pseudo atoms or pseudo atom constraints | * Insert pseudo atoms or pseudo atom constraints | ||
*Generate covalent connectivities | * Generate covalent connectivities | ||
*Sort atoms, distance or angle constraints | * Sort atoms, distance or angle constraints | ||
== Availability == | |||
* COFIMA is [[COFIMA 2.2 Software License|available]] free-of-charge. The current version is COFIMA 2.2. | |||
== | == Documentation == | ||
*[[Media:CofimaManual.pdf|Manual (PDF)]] | * [[Media:CofimaManual.pdf|Manual (PDF)]] | ||
Latest revision as of 04:56, 28 June 2011
Coordinate and constraint file manipulation
COFIMA (© by Peter Güntert) is a versatile program for interactive manipulations on Cartesian coordinate, distance constraint and dihedral angle constraint files.
With COFIMA you can easily:
- Convert between different data file formats
- Rename atoms, residues and dihedral angles
- Delete atoms, distance or angle constraints
- List specific atoms, distance or angle constraints
- Measure distances and dihedral angles
- Attach atoms (e.g. hydrogens)
- Insert pseudo atoms or pseudo atom constraints
- Generate covalent connectivities
- Sort atoms, distance or angle constraints
Availability
- COFIMA is available free-of-charge. The current version is COFIMA 2.2.