5SCRIPTS: cyana - CYANA shell script

Synopsis: cyana [option] [macro]

The 'cyana' shell script starts the CYANA program. If present, the given
<macro> is executed by CYANA, otherwise the program will prompt for
interactive input. The <macro> name can be given with or without the
'.cya' extension.

The 'cyana' command can only be invoked from the Unix shell. The command
syntax follows Unix (not INCLAN) conventions.

Options:

  -h            help
  -c <command>  command to start program
  -S            run in safe mode, i.e. within one directory
  -t <system>   use executable for explicit system type
  -x            display name of executable without executing it

Executables for several different system types can be installed
simultaneously. The 'cyana' script chooses automatically an executable
that is suitable for the present computer and operating system.
Alternatively, the system can be chosen explicitly with the '-t' option.

The '-c' option can be used, for example, to start a parallel MPI
version of the program with 'mpirun', or to run CYANA under the control
of a debugger. For example,

  cyana -t intel-debug -c gdb
  
starts a CYANA version for the system type 'intel-debug' (compiled with
the Intel Fortran compiler using switches to include debugging
information) under the control of the GNU debugger, 'gdb'.

The 'cyanajob' script provides a convenient way to run CYANA calculations 
in parallel and/or in batch mode. 

See also: cyanajob
